Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to produce required input files for Bootstrapping-for-BQSR @ NCI-Gadi.
Infrastructure_deployment_metadata: Gadi (NCI)
Views: 265 Downloads: 3
Created: 18th Aug 2021 at 00:26
Last updated: 7th Sep 2021 at 07:24
Last used: 16th Oct 2021 at 00:48