Bootstrapping-for-BQSR @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to produce required input files for Bootstrapping-for-BQSR @ NCI-Gadi.

Infrastructure_deployment_metadata: Gadi (NCI)

help Creators and Submitter
Sadsad, R., & Chew, T. (2021). Bootstrapping-for-BQSR @ NCI-Gadi. WorkflowHub.

Views: 265   Downloads: 3

Created: 18th Aug 2021 at 00:26

Last updated: 7th Sep 2021 at 07:24

Last used: 16th Oct 2021 at 00:48

help Attributions


Version History

Version 1 Created 18th Aug 2021 at 00:26 by Tracy Chew

No revision comments

Related items

Powered by
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH