1 item tagged with 'BQSR'.
Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to ...
Type: Shell Script
Creators: Tracy Chew, Rosemarie Sadsad, Cali Willet
Submitter: Tracy Chew
Created: 18th Aug 2021 at 00:26, Last updated: 7th Sep 2021 at 07:24