Teams: EI Core Bioinformatics Group
Organizations: Earlham Institute
https://orcid.org/0000-0003-1360-7808
Expertise: Bioinformatics, Data Management, Genomics, High Performance Computing, NGS, Python, R, Scientific workflow developement, Software Engineering, Workflows
Tools: CWL, Conda, Databases, Galaxy, Genomics, Git, Java, Jupyter notebook, Machine Learning, Nextflow, Perl, Python, R, Single Cell analysis, Snakemake, Transcriptomics, WDL, Workflows, nf-core
Gemy Kaithakottil is a Senior Bioinformatician / Developer at the Earlham Institute
Expertise: High Performance Computing, Distributed Computing, Workflows
Tools: C/C++, Databases, Java, Python, Web services
Expertise: Machine Learning, R, Scientific workflow developement, Workflows, Agronomy, Biostatistics
Teams: CRIM - Computer Research Institute of Montréal
Organizations: CRIM
https://orcid.org/0000-0003-4862-3349
Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision
Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC
Teams: Biodiversity Genomics Europe (general), iBOL Europe Metabarcoding
Organizations: Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva
https://orcid.org/0000-0001-8650-7248
Expertise: Molecular Biology, phylogenetics, evolution
Tools: Databases, Genomics, Genetic analysis
Teams: EOSC-Life WP3 OC Team, cross RI project, EOSC-Life WP3, Euro-BioImaging
Organizations: EOSC-Life, Euro-BioImaging
Expertise: Bioengineering, Bioinformatics, Computer Science, Data Management
Tools: Databases, Jupyter notebook, Python
Biomedical Engineer working on preclinical image dataset repository and cross researching RIs
Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering
Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows
Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!
Teams: Bioinformatics Innovation Lab
Organizations: Pondicherry University
https://orcid.org/0000-0003-4854-8238
Expertise: Bioinformatics, Systems Biology, Machine Learning
Tools: Galaxy, Cytoscape, Databases, Jupyter notebook, R, Python
Assistant Professor (Research) at Department of Bioinformatics, School of Chemical & Biotechnology, SASTRA Deemed to be University
Teams: GalaxyProject SARS-CoV-2
Organizations: BC Centre for Disease Control
https://orcid.org/0000-0002-6178-3585
Expertise: Bioinformatics, Data Management, Molecular Biology
Tools: Databases, PCR, Workflows, Web services
The research group focuses on chemical data in the context of biological systems. The investigated areas include structural bioinformatics of proteins and the application of computational methods of molecular modeling for designing the structural activity of new small molecules for specific biological effects.Another focus of the group is the development and operation of chemical databases and tools. The MolMeDB database collects physicochemical data on interactions of small molecules with membranes ...
Space: Independent Teams
Public web page: https://www.kfc.upol.cz/en/
Organisms: Not specified
Toward data-driven genome breeding (digital breeding), we are developing data analysis infrastructure technology essential for genome editing, focusing on gene function analysis using bioinformatics called BioDX.
Space: Hiroshima workflow community
Public web page: https://bonohu.hiroshima-u.ac.jp/index_en.html
Organisms: Not specified
Abstract (Expand)
Author: Fabrice Touzain
Date Published: 2025
Publication Type: Dataset
Citation: Zenodo. https://zenodo.org/doi/10.5281/zenodo.15065124.
Article abstract
Permeability is an important molecular property in drug discovery, as it co-determines pharmacokinetics whenever a drug crosses the phospholipid bilayer, e.g., into the cell, in the gastrointestinal tract or across the blood-brain barrier. Many methods for the determination of permeability have been developed, including cell line assays, cell-free model systems like PAMPA mimicking, e.g., gastrointestinal epithelia or the skin, as well as the Black lipid membrane (BLM) and ...
Current version of this workflow: https://workflowhub.eu/workflows/1109. Please use only with the new version. KNIME workflow to gather ChEMBL permeability data is availbale: https://workflowhub.eu/workflows/1169.
