Space: iBOL Europe
SEEK ID: https://workflowhub.eu/projects/329
Public web page: Not specified
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 15th Apr 2025
Related items
Teams: Biodiversity Genomics Europe (general), iBOL Europe Metabarcoding
Organizations: BIOPOLIS Association (BIOPOLIS-CIBIO)

Expertise: Molecular Biology, phylogenetics, evolution
Tools: Databases, Genomics, Genetic analysis
Welcome to the iBOL Europe Space!
Here we collect, curate and develop SOPs and pipelines to extract, sequence, assemble and publish DNA barcodes, genome skims and DNA metabarcodes for all eukaryotic life.
For fresh sample barcoding head to our Barcoding Team
For museum specimen genome skimming head to our Museum Skimming Team
For barcode data wrangling head to our Barcode Data Team ...
Teams: iBOL Europe Museum Skimming, iBOL Europe Metabarcoding, iBOL Europe Barcoding, iBOL Europe Barcode Data
Web page: https://iboleurope.org/
SOP for DNA extraction and Illumina amplicon library preparation of soil core samples collected for the Case Study "Characterization of Prokaryotic and Eukaryotic Biodiversity from Soil Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creators: Cátia Chaves, Laura Najera Cortazar, Filipa Martins, Sten Anslan, Albano Beja-Pereira, Maria Magalhães, Ben Price
Submitter: Cátia Chaves
SOP for DNA extraction and Illumina amplicon library preparation of encapsulated water samples collected for the Case Study "Detection of Non-Indigenous Marine Species from Port Water Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creators: Cátia Chaves, Laura Najera Cortazar, Filipa Martins, Joana Veríssimo, Glen Dunshea, Ben Price
Submitter: Cátia Chaves
Within the Biodiversity Genomics Europe project, the "High Mountain Systems - Arthropods" case study was designed to evaluate how arthropod communities change along altitudinal gradients in seven selected mountain systems across different countries in Europe, establishing baseline sampling in mountain ranges to track biodiversity shifts associated with climate change. This SOP describes the sampling design and fieldwork methodology for retrieving arthropod bulk samples for metabarcoding analyses. ...
Creators: Laura Najera Cortazar, Sonia Ferreira, Vanessa Mata, Pedro Beja
Submitter: Laura Najera Cortazar
Within the Biodiversity Genomics Europe project, the "Ecological Restoration - Soil" case study was designed to evaluate changes in soil biodiversity during the process of ecological succession, sampling a chronosequence of replicated plots at different stages of restoration since land abandonment. The present SOP describes soil sampling under sterile and cold conditions for metabarcoding analyses. This case study involved sampling four successional stages, represented by specific vegetation types ...
Creators: Laura Najera Cortazar, Albano Beja-Pereira , Pedro Beja
Submitter: Laura Najera Cortazar
Within the Biodiversity Genomics Europe project, the "Pollinator Communities" case study was designed to evaluate pollinator diversity in urban gardens in comparison with agricultural fields, to understand the role of urban habitats for pollinator conservation. This SOP describes the sampling design and Malaise trap fieldwork to retrieve pollinator bulk samples for metabarcoding analysis. This case study involved paired sampling, choosing one large garden and one agricultural field with no more ...
Creators: Laura Najera Cortazar, Sonia Ferreira, Pedro Beja
Submitter: Laura Najera Cortazar