Workflows

What is a Workflow?
1204 Workflows visible to you, out of a total of 1288

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Helixer, available ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow is developed for automatic detection and measuring of mitoflashes in time-lapse microscopy images.

In addition, this workflow can be used for detection and tracking of other spot-like organelles with small motion.

If this workflow helped with the analysis of your data, please do not forget to cite: https://doi.org/10.1097/j.pain.0000000000002642

Associated Tutorial

This workflows is part of the tutorial [Tracking of mitochondria and capturing ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Genome annotation with Prokka

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Prokka, available in the GTN

Features

Thanks to...

Workflow Author(s): Anna Syme, Torsten ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

  • Includes ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Filter, Plot and Explore Single-cell RNA-seq Data

Associated Tutorial

This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN

Features

Thanks

...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Pre-processing of Single-Cell RNA Data

Associated Tutorial

This workflows is part of the tutorial Pre-processing of Single-Cell RNA Data, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, [Bérénice ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Galaxy 101

Associated Tutorial

This workflows is part of the tutorial Galaxy Basics for genomics, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Microbiome - QC and Contamination Filtering

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Pre-processing of Single-Cell RNA Data

Associated Tutorial

This workflows is part of the tutorial Pre-processing of Single-Cell RNA Data, available in the GTN

Features

Thanks to...

Tutorial Author(s): [Mehmet ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

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