Workflows
What is a Workflow?Filters
NGS data logistics
Associated Tutorial
This workflows is part of the tutorial NGS data logistics, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Masking repeats in a genome using RepeatMasker
Associated Tutorial
This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Anthony ...
Updated March 2024
Associated Tutorial
This workflows is part of the tutorial Combining single cell datasets after pre-processing, available in the GTN
Thanks to...
Workflow Author(s): Julia Jakiela, Wendi Bacon
Tutorial Author(s): Wendi Bacon ...
This workflow is for the training material: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_alevin/tutorial.html
Associated Tutorial
This workflows is part of the tutorial Generating a single cell matrix using Alevin, available in the GTN
Features
- Includes a [Galaxy Workflow ...
introduction
Associated Tutorial
This workflows is part of the tutorial Galaxy Basics for everyone, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): [Anne ...
Creates input file for Filter, Plot, Explore tutorial
Associated Tutorial
This workflows is part of the tutorial Importing files from public atlases, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
CRISPR screen analysis
Associated Tutorial
This workflows is part of the tutorial CRISPR screen analysis, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Kenji Fujihara, ...
This workflow generates a single cell matrix using Alevin.
Associated Tutorial
This workflows is part of the tutorial Generating a single cell matrix using Alevin, available in the GTN
Thanks to...
Workflow Author(s): Julia Jakiela, Wendi Bacon
Tutorial Author(s): Wendi Bacon, ...
Associated Tutorial
This workflows is part of the tutorial Introduction to Image Analysis using Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
**Tutorial ...
AnnData to CDS format conversion (manually using Galaxy buttons). This workflow does not include renaming the column containing gene symbols.
Associated Tutorial
This workflows is part of the tutorial Converting between common single cell data formats, available in the GTN
Features
- Includes [Galaxy Workflow ...