Workflows

What is a Workflow?
1204 Workflows visible to you, out of a total of 1288

Workflow of Tutorial "Single-cell ATAC-seq standard processing with SnapATAC2". This workflow takes a fragment file as input and performs the standard steps of scATAC-seq analysis: filtering, dimension reduction, embedding and visualization of marker genes with SnapATAC2. In an alternative step, the fragment file can also be generated from a BAM file.

Associated Tutorial

This workflows is part of the tutorial [Single-cell ATAC-seq standard processing with ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Genome annotation with Maker (short)

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau

[![gtn star logo followed by the ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Features

  • Uses ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell RNA Datasets, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Downstream Single-cell RNA analysis with RaceID

Associated Tutorial

This workflows is part of the tutorial Downstream Single-cell RNA analysis with RaceID, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

A workflow designed to compare chromosomes and study large-scale rearrangements using CHROMEISTER

Associated Tutorial

This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Introduction to Genomics and Galaxy

Associated Tutorial

This workflows is part of the tutorial Introduction to Genomics and Galaxy, available in the GTN

Thanks to...

Tutorial Author(s): Dave Clements, [Cristóbal ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Workflow associated with this training: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Combining single cell datasets after pre-processing, available in the GTN

Features

  • Includes ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment

Associated Tutorial

This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow creates bulk ESet objects from uploaded raw matrix & metadata files

Associated Tutorial

This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

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