Workflows

What is a Workflow?
1204 Workflows visible to you, out of a total of 1288

Associated Tutorial

This workflows is part of the tutorial Filter, plot, and explore single cell RNA-seq data with Seurat, available in the GTN

Features

Thanks to...

Workflow Author(s): ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

atac-seq

Associated Tutorial

This workflows is part of the tutorial ATAC-Seq data analysis, available in the GTN

Thanks to...

Tutorial Author(s): Lucille Delisle, Maria Doyle, [Florian ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Given a set of VCF files and the reference genome used to do the mapping and SNP calling, create a multifasta file containing the genomes of all samples and calculate the matrix of pairwise SNP distances

Associated Tutorial

This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

DNA Methylation data analysis

Associated Tutorial

This workflows is part of the tutorial DNA Methylation data analysis, available in the GTN

Features

Thanks to...

Tutorial Author(s): [Joachim ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Converting NCBI Data to the AnnData Format, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Starting from the BAM files produced by snippy, generate a table that summarizes the drug-resistance profile for each sample

Associated Tutorial

This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN

Thanks to...

Tutorial Author(s): [Galo A. ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

CUT&RUN workflow used in GTN

Associated Tutorial

This workflows is part of the tutorial CUT&RUN data analysis, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you are using the separate preprocessing tools (NormalizeData, FindVariableFeatures, ScaleData).

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

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