6 items tagged with 'RNASEQ'.
Work-in-progress
Workflow for Spliced RNAseq data
Steps:
workflow_quality.cwl:
FastQC (Read Quality Control)
fastp (Read Trimming)
STAR (Read mapping)
featurecounts (transcript read counts)
kallisto (transcript [pseudo]counts)
Created: 22nd Dec 2020 at 15:53
Stable
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.
Created: 22nd Jul 2020 at 11:58
Stable
Alignment, assembly and annotation of generated transcripts from RNASEQ reads.
Created: 18th Jun 2020 at 00:17, Last updated: 1st Jul 2020 at 09:55
Stable
Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.
Created: 18th Jun 2020 at 00:13, Last updated: 1st Jul 2020 at 09:57
Stable
Alignment, assembly RNASEQ reads and annotation of generated transcripts.
Created: 18th Jun 2020 at 00:07, Last updated: 1st Jul 2020 at 10:00
Stable
Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
Created: 18th Jun 2020 at 00:03, Last updated: 1st Jul 2020 at 10:03