WorkflowHub

10 items tagged with 'Scientific workflow developement'.

People (10)

Teams: Not specified

Organizations: Not specified

Expertise: Bioengineering, Bioinformatics, Scientific workflow developement, Systems Biology, Workflows, Computer Aided Design

Tools: Databases, Jupyter notebook, Nextflow, Python, Transcriptomics, Computational and theoretical biology, SBML, Matlab

Alejandra Guerrero

Teams: WP5 - Volcanoes

Organizations: Geosciences Barcelona (GEO3BCN-CSIC)

https://orcid.org/0000-0001-8723-4368

Expertise: Computer Science, Scientific workflow developement

Priyanka Surana

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-7167-0875

Expertise: Bioinformatics, Genomics, Scientific workflow developement

Tools: Nextflow, nf-core, Python, R

Bruno P. Kinoshita

Teams: BSC-CES

Organizations: Barcelona Supercomputing Center (BSC-CNS)

https://orcid.org/0000-0001-8250-4074

Expertise: Scientific workflow developement, workflow managers, Software Engineering, open source, fuzzy logic, graphs

Tools: CWL, Autosubmit, Cylc, ecFlow

Research Engineer (Workflow Engineer) at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. Working on the Autosubmit workflow manager.

Previously NIWA/Cylc, and Curii/CWL.

Volodymyr Savchenko

Teams: ODA

Organizations: MMODA

https://orcid.org/0000-0001-6353-0808

Expertise: astronomy, Data Management, high-performance computing, image analysis, Scientific workflow developement, Software Engineering

Tools: CWL, Machine Learning, Workflows, Python, Snakemake, Databases

Kary Ocaña

Teams: ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression

Organizations: National Laboratory of Scientific Computing

https://orcid.org/0000-0002-2151-7418

Expertise: Bioinformatics, Scientific workflow developement, high-performance computing, phylogenomics

I am a bioinformatician and phylogenetics. I really love working on problems at the intersection of high-performance computing and scientific workflows applied to omics

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Julie Ripoll