Workflows

Post-curation processing workflow for VGP assemblies. Takes a curated AGP file and combined haplotype FASTA, splits by haplotype, applies curation, assigns chromosome names, renames and reorients hap2 to match hap1, then generates QC outputs including Compleasm, Pretext maps, telomere analysis, and coverage tracks.

This workflow performs colour deconvolution and automated thresholding to quantify stained area in brightfield histological images (MT, IHC). It accepts whole slides or pre-cropped ROIs.

A comprehensive Galaxy workflow for the end-to-end analysis of transcriptomics data, featuring automated QC, clustering, spatial statistics, cell type annotation, and cell-cell communication.

Metaproteomics 101 tutorial

Associated Tutorial

This workflows is part of the tutorial Metaproteomics tutorial, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

This WF applies Flexynesis on BRCA data from Metabric for a classification task

Associated Tutorial

This workflows is part of the tutorial Modeling Breast Cancer Subtypes with Flexynesis, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Regression in Machine Learning

Associated Tutorial

This workflows is part of the tutorial Regression in Machine Learning, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

22_04_30: WF Update

The workflow serves as a short introduction to Galaxy for users from the Humanities who mostly work with texts.

Associated Tutorial

This workflows is part of the tutorial Introduction to Digital Humanities in Galaxy, available in the GTN

Features

• Includes [Galaxy Workflow ...

Workflow used for the Ecology tutorial devoted to use yolo model on SEANOE marine data

Associated Tutorial

This workflows is part of the tutorial Object detection with YOLO, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a ...

V 20 Renamed several output datasets in workflow

Associated Tutorial

This workflows is part of the tutorial Text-Mining Differences in Chinese Newspaper Articles, available in the GTN

Features

• Includes a Galaxy Workflow Report
• Uses ...

Text mining a museum collection in tabular format to extract from which year most objects derive and what they are.

Version 2, including updated tools from 05/2026.