Workflows
What is a Workflow?Filters
Run this on the trimmed consensus reads (DCS or SSCS) from Du Novo.
Associated Tutorial
This workflows is part of the tutorial Calling very rare variants, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, [Nick ...
Calling variants in non-diploid systems
Associated Tutorial
This workflows is part of the tutorial Calling variants in non-diploid systems, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Mapping
Associated Tutorial
This workflows is part of the tutorial Mapping, available in the GTN
Thanks to...
Tutorial Author(s): Joachim Wolff, Bérénice Batut, [Helena ...
Virtual screening of the SARS-CoV-2 main protease with rDock and pose scoring
Associated Tutorial
This workflows is part of the tutorial Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring, available in the GTN
Thanks to...
Tutorial Author(s): Simon Bray ...
This workflow begins from a set of genome assemblies of different samples, strains, species. The genome is first annotated with Funnanotate. Predicted proteins are furtner annotated with Busco. Next, 'ProteinOrtho' finds orthologs across the samples and makes orthogroups. Orthogroups where all samples are represented are extracted. Orthologs in each orthogroup are aligned with ClustalW. The alignments are cleaned with ClipKIT and the concatenation matrix is built using PhyKit. This can be used ...
Calling variants in diploid systems
Associated Tutorial
This workflows is part of the tutorial Calling variants in diploid systems, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Visualization of Climate Data using NetCDF Xarray Map Plotting
Associated Tutorial
This workflows is part of the tutorial Visualization of Climate Data using NetCDF xarray Map Plotting, available in the GTN
Thanks to...
Workflow Author(s): Soumya Jha
Tutorial Author(s): Soumya Jha ...
Removal of human reads from SARS-CoV-2 sequencing data
Associated Tutorial
This workflows is part of the tutorial Removal of human reads from SARS-CoV-2 sequencing data, available in the GTN
Thanks to...
Tutorial Author(s): Wolfgang Maier
[![gtn star ...
Workflow includes data import, format conversion and some basic medicinal chemistry analyses.
Associated Tutorial
This workflows is part of the tutorial Data management in Medicinal Chemistry, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
This workflow is created as part of a tutorial listed on GTN. The workflow shows the steps in human copy number variance detection using the Contrl_FREEC tool.
Associated Tutorial
This workflows is part of the tutorial Somatic Variant Discovery from WES Data Using Control-FREEC, available in the GTN
Features
- Includes [Galaxy ...