## Purge dups This snakemake pipeline is designed to be run using as input a contig-level genome and pacbio reads. This pipeline has been tested with `snakemake v7.32.4`. Raw long-read sequencing files and the input contig genome assembly must be given in the `config.yaml` file. To execute the workflow run: `snakemake --use-conda --cores N` Or configure the cluster.json and run using the `./run_cluster` command