Genome-assessment-post-assembly
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Run on GalaxyPost-genome assembly quality control workflow using Quast, BUSCO, Meryl, Merqury and Fasta Statistics
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| FASTA contigs - Primary Assembly | FASTA contigs - Primary Assembly | n/a |
|
| Raw reads | Raw reads | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 3 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 4 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1 |
| 5 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy0 |
| 6 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Meryl on input dataset(s): read-db.meryldb | Meryl on input dataset(s): read-db.meryldb | n/a |
|
| Fasta Statistics on input dataset(s): summary stats | Fasta Statistics on input dataset(s): summary stats | n/a |
|
| Quast on input dataset(s): PDF report | Quast on input dataset(s): PDF report | n/a |
|
| Quast on input dataset(s): HTML report | Quast on input dataset(s): HTML report | n/a |
|
| Quast on input dataset(s): tabular report | Quast on input dataset(s): tabular report | n/a |
|
| Quast on input dataset(s): Log | Quast on input dataset(s): Log | n/a |
|
| Busco on input dataset(s): full table | Busco on input dataset(s): full table | n/a |
|
| Merqury on input dataset(s): stats | Merqury on input dataset(s): stats | n/a |
|
| Merqury on input dataset(s): qv | Merqury on input dataset(s): qv | n/a |
|
| Merqury on input dataset(s): png | Merqury on input dataset(s): png | n/a |
|
| Merqury on input dataset(s): size files | Merqury on input dataset(s): size files | n/a |
|
| Merqury on input dataset(s): bed | Merqury on input dataset(s): bed | n/a |
|
| Merqury on input dataset(s): wig | Merqury on input dataset(s): wig | n/a |
|
Version History
v2.0.8 (latest) Created 21st Apr 2026 at 04:15 by Anna Syme
Merge pull request #14 from AustralianBioCommons/update-convert-v2.0.8
Update Merqury tool_state and Convert characters1 (v2.0.8)
Frozen
v2.0.845348f1
v2.0.6 - ignore Created 4th Dec 2024 at 02:15 by Anna Syme
Merge pull request #10 from AnnaSyme/wf-name-change
Rename updated-Galaxy-Workflow-Genome_assessment_post_assembly.ga to …
Frozen
master0154e28
v2.0.2 Created 16th Apr 2024 at 08:19 by Johan Gustafsson
Update .lifemonitor.yaml
Frozen
v2.0.2
4ad99a2
v1.1.0 Created 9th May 2023 at 01:59 by Johan Gustafsson
Add missing raw data input
Frozen
v1.1.0
46d8253
v1.0.0 (earliest) Created 7th Nov 2022 at 07:10 by Johan Gustafsson
Update links
Frozen
v1.0.0
efaf002
Creators and Submitter
Views: 14133 Downloads: 3399 Runs: 8
Created: 7th Nov 2022 at 07:10
Last updated: 17th Apr 2026 at 10:06
AttributionsNone
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HiFi genome assembl...
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Teams: QCIF Bioinformatics, Galaxy Australia
Organizations: QCIF
https://orcid.org/0000-0003-2439-8650
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia, National Computational Infrastructure (NCI) WorkflowHub team
Web page: https://www.biocommons.org.au/
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy ...
Space: Australian BioCommons
Public web page: https://usegalaxy.org.au/
This ARDC and BioCommons sponsored project delivers a key component of BioCommon’s vision for an ecosystem of platforms providing researchers with sophisticated data analysis and digital asset stewardship capabilities. The Bring Your Own Data (BYOD) Platform (https://www.biocommons.org.au/byod-expansion) has enabled highly accessible, highly available, highly scalable analysis and data sharing capabilities for the benefit of life science researchers nationally.
**This WorkflowHub collection ...
