Debruijn Graph Velvet Full and SPAdes Assembly 1.0
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This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Tristan Reynolds, Delphine Lariviere
Tutorial Author(s): Simon Gladman, Helena Rasche, Saskia Hiltemann
Tutorial Contributor(s): Tristan Reynolds, Saskia Hiltemann, Björn Grüning, Helena Rasche, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, Simon Gladman, William Durand, Niall Beard, Maria Doyle
Funder(s): The University of Melbourne, Melbourne Bioinformatics, Australian BioCommons
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Paired Reads Collection | Input Paired Reads Collection | n/a |
|
| mutant_R1.fastq | mutant_R1.fastq | n/a |
|
| mutant_R2.fastq | mutant_R2.fastq | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | VelvetOptimiser | toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 |
| 4 | velveth | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3 |
| 5 | SPAdes | toolshed.g2.bx.psu.edu/repos/nml/spades/spades/4.2.0+galaxy0 |
| 6 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
| 7 | velvetg | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.2 |
| 8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
| 9 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
| 10 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | _anonymous_output_1 | n/a |
|
| _anonymous_output_2 | _anonymous_output_2 | n/a |
|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
| spades_log | spades_log | n/a |
|
| fasta_stats_velvet | fasta_stats_velvet | n/a |
|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| fasta_stats_spades | fasta_stats_spades | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
Version History
master
Creators and Submitter
Views: 590 Downloads: 102 Runs: 1
Created: 12th Jan 2026 at 13:17
AttributionsNone
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