Genome Assembly of MRSA using Illumina MiSeq Data
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Run on GalaxyGenome Assembly of MRSA using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Bazante Sanders, Bérénice Batut, Tristan Reynolds
Tutorial Author(s): Bazante Sanders, Bérénice Batut
Tutorial Contributor(s): Helena Rasche, Bazante Sanders, Saskia Hiltemann, Miaomiao Zhou, Verena Moosmann, Tristan Reynolds, Teresa Müller, Deepti Varshney, Anthony Bretaudeau, Cristóbal Gallardo, Björn Grüning, pimarin, Bérénice Batut, Nate Coraor, Wolfgang Maier, Paul Zierep
Funder(s): Avans Hogeschool, ABRomics, The University of Melbourne, Melbourne Bioinformatics, Australian BioCommons
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Paired End Collection | Input Paired End Collection | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | fastp | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 |
| 2 | Falco | toolshed.g2.bx.psu.edu/repos/iuc/falco/falco/1.2.4+galaxy0 |
| 3 | Shovill | toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy2 |
| 4 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 |
| 5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
| 6 | Bandage Info | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/2022.09+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| fastp_json | fastp_json | n/a |
|
| shovill_log | shovill_log | n/a |
|
| quast_output | quast_output | n/a |
|
| bandage_info_output | bandage_info_output | n/a |
|
Version History
master
2.0
Creators and Submitter
Views: 2475 Downloads: 351 Runs: 4
Created: 2nd Jun 2025 at 11:00
Last updated: 5th Jan 2026 at 13:16
Tags AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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