Germline-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Germline-ShortV @ NCI-Gadi is an implementation of the BROAD Institute's best practice workflow for germline short variant discovery. This implementation is optimised for the National Compute Infrastucture's Gadi HPC, utilising scatter-gather parallelism to enable use of multiple nodes with high CPU or memory efficiency. This workflow requires sample BAM files, which can be generated using the Fastq-to-bam @ NCI-Gadi pipeline. Germline-ShortV can be applied to model and non-model organisms (including non-diploid organisms).

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 17th Aug 2021 at 05:35 by Tracy Chew

Added/updated 2 files

Open master a302549
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Additional credit

Cali Willet

Sadsad, R., Samaha, G., & Chew, T. (2021). Germline-ShortV @ NCI-Gadi. WorkflowHub.

Views: 3105   Downloads: 227

Created: 17th Aug 2021 at 05:35

Last updated: 9th Sep 2021 at 02:34

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