Research Object Crate for Germline-ShortV @ NCI-Gadi

Germline-ShortV @ NCI-Gadi is an implementation of the BROAD Institute's best practice workflow for germline short variant discovery. This implementation is optimised for the National Compute Infrastucture's Gadi HPC, utilising scatter-gather parallelism to enable use of multiple nodes with high CPU or memory efficiency. This workflow requires sample BAM files, which can be generated using the [Fastq-to-bam @ NCI-Gadi](https://workflowhub.eu/workflows/146) pipeline. Germline-ShortV can be applied to model and non-model organisms (including non-diploid organisms). Infrastructure\_deployment\_metadata: Gadi (NCI)

Author

Rosemarie Sadsad, Georgina Samaha, Tracy Chew, Cali Willet

License

GPL-3.0

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