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A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks.

This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O.

By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.

Based on a pipeline by Sydney Informatics Hub: https://github.com/Sydney-Informatics-Hub/SIH-Raijin-Trinity

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Views: 294   Downloads: 11

Created: 17th Mar 2021 at 03:01

Last updated: 26th Mar 2021 at 12:58

Last used: 11th May 2021 at 11:37

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Version 2 (latest) Created 26th Mar 2021 at 12:58 by Marco De La Pierre

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Version 1 (earliest) Created 17th Mar 2021 at 03:01 by Marco De La Pierre

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