Teams: EI Core Bioinformatics Group
Organizations: Earlham Institute
https://orcid.org/0000-0003-1360-7808
Gemy Kaithakottil is a Senior Bioinformatician / Developer at the Earlham Institute
I'm a bioinformatician for the National Bioinformatics Infrastrure Sweden. I specialise in de novo genome assembly and workflow development with Nextflow. I'm also a Nextflow ambassador and nf-core maintainer.
Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!
Bioinformatician in Stockholm, Sweden. Lead for nf-core and MultiQC projects.
Tests Passing
Introduction
nf-core/proteinfamilies is a bioinformatics pipeline that generates protein families from amino acid sequences and/or updates existing families with new sequences. It takes a protein fasta file as input, clusters the sequences and then generates protein family Hidden Markov Models (HMMs) along with their multiple sequence alignments (MSAs). Optionally, paths to existing family HMMs and MSAs can be given (must have matching base filenames one-to-one) in order to update with new ...
