WorkflowHub

11 items tagged with 'Data Management'.

People (11)

Teams: Not specified

Organizations: Not specified

Expertise: Bioinformatics, Computer Science, Data Management, Genomics, Python, R, Scientific workflow developement, Workflows, phylogenomics

Tools: Galaxy, Genomics, Git, Python, R, Workflows

Amy Curwin

Teams: EGA

Organizations: EGA

https://orcid.org/0000-0003-1086-2483

Expertise: Data Management, Molecular Biology, Biochemistry, Genetics

Scientific Project Manager at the EGA (European Genome-phenome Archive)

Gaurav Sablok

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-4157-9405

Expertise: Bioinformatics, Data Management, Machine Learning, Scientific workflow developement, Software Engineering, high-performance computing

Research Interest: Bioinformatics | Deep Learning | DevOps | Generative AI | Knowledge Graphs. Highly communicative, task oriented, feature responsive, time oriented, approachable, solution seeker and initiative taker focussed professional working across a wide variety of topics which includes bioinformatics involving genomes, transcriptomes, metagenomes and metatranscriptomes focussing on datasets coming from the plant, bacterial and fungal genome (Illumina Miseq, NextSeq, NovaSeq, PacBio, Oxford ...

Shuxin Zhang

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-4715-9070

Expertise: Data Management, Database Development, Semantic Web, Ontology, Knowledge Graph

Tools: Python, SPARQL, RDF, OWL, RML, ShEx

Elisabetta Spinazzola

Teams: EOSC-Life WP3 OC Team, cross RI project, EOSC-Life WP3, Euro-BioImaging

Organizations: EOSC-Life, Euro-BioImaging

Expertise: Bioengineering, Bioinformatics, Computer Science, Data Management

Tools: Databases, Jupyter notebook, Python

Biomedical Engineer working on preclinical image dataset repository and cross researching RIs

Volodymyr Savchenko

Teams: ODA, EuroScienceGateway

Organizations: MMODA, EPFL

https://orcid.org/0000-0001-6353-0808

Expertise: astronomy, Data Management, high-performance computing, image analysis, Scientific workflow developement, Software Engineering

Tools: CWL, Machine Learning, Workflows, Python, Snakemake, Databases

Erwan Le Floch

Teams: URGI

Organizations: INRAe

https://orcid.org/0000-0002-1010-6859

Expertise: Data Management, Plant Sciences

Tools: MIAPPE

Research engineer at INRAE, part of the URGI research unit.

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Julie Ripoll

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-1590-8313

Expertise: Bioinformatics, Biostatistics, Bioengineering, Metagenomics, Scientific workflow developement, Data Management, Systems Biology, Ecophysiology

Tools: Transcriptomics, Python, Workflows, Snakemake, R, Conda, Jupyter notebook, Java, Web, Machine Learning, Databases

Dan Fornika

Teams: GalaxyProject SARS-CoV-2

Organizations: BC Centre for Disease Control

https://orcid.org/0000-0002-6178-3585

Expertise: Bioinformatics, Data Management, Molecular Biology

Tools: Databases, PCR, Workflows, Web services