Expertise: Bioinformatics, Metagenomics, NGS, Scientific workflow developement, Software Engineering
Tools: Conda, Jupyter notebook, Python, R, Single Cell analysis, Snakemake
Teams: CRIM - Computer Research Institute of Montréal
Organizations: CRIM
https://orcid.org/0000-0003-4862-3349Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision
Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC
Teams: RECETOX SpecDatRI, RECETOX, usegalaxy-eu, ELIXIR Metabolomics
Organizations: Masaryk University, RECETOX
https://orcid.org/0000-0001-6744-996XExpertise: Bioinformatics, Cheminformatics, Metabolomics, Python, R, Software Engineering, Workflows
Tools: Metabolomics, Python, R, Workflows, Mass spectrometry, Chromatography
Teams: FAIR Computational Workflows
Organizations: Telespazio UK
Expertise: Software Engineering, Reproducible Science, ARD (Analysis Ready Data), Data Quality, Space Industry
Tools: Workflows
Ground Segment Architect specialising in Reproducible Science, AI (Artificial Intelligence), ARD (Analysis Ready Data) and Quality initiatives in the space industry. Heavily involved in the architecture of Open Source solutions, frameworks and platforms.
Expertise: High Performance Computing, Scientific workflow developement, Software Engineering, astronomy
Tools: Galaxy, Jupyter notebook, Python, Workflows, Git
Research Interest: Bioinformatics | Deep Learning | DevOps | Generative AI | Knowledge Graphs. Highly communicative, task oriented, feature responsive, time oriented, approachable, solution seeker and initiative taker focussed professional working across a wide variety of topics which includes bioinformatics involving genomes, transcriptomes, metagenomes and metatranscriptomes focussing on datasets coming from the plant, bacterial and fungal genome (Illumina Miseq, NextSeq, NovaSeq, PacBio, Oxford ...
Teams: AI4Life OC
Organizations: ai4life
Expertise: AI, Software Engineering, Bioimage
Tools: Python
Teams: BSC-CES, COMPSs Tutorials
Organizations: Barcelona Supercomputing Center (BSC-CNS)
https://orcid.org/0000-0001-8250-4074Expertise: Scientific workflow developement, workflow managers, Software Engineering, open source, fuzzy logic, graphs
Tools: CWL, Autosubmit, Cylc, ecFlow
Research Engineer (Workflow Engineer) at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. Working on the Autosubmit workflow manager.
Previously NIWA/Cylc, and Curii/CWL.
Expertise: Bioinformatics, Cheminformatics, Software Engineering, Metabolomics, Lipidomics
Teams: Not specified
Organizations: Not specified
Expertise: image analysis, Software Engineering, Computer Science
Teams: Applied Computational Biology at IEG/HMGU
Organizations: Helmholtz Zentrum München
https://orcid.org/0000-0003-4796-1661Expertise: Software Engineering, Machine Learning, AI
Tools: Java, Jupyter notebook, Web services, Python
Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering
Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows
Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!
Expertise: Bioinformatics, Molecular Biology, Computer Science, NGS, Software Engineering
Teams: V-Pipe
Organizations: SIB - Swiss Institute of Bioinformatics
https://orcid.org/0000-0002-7561-0810Expertise: Bioinformatics, Software Engineering
Medical doctor and bioinformatician
Developer from the Swiss Institute of Bioinformatics (SIB) Working at the Computational Biology Group (CBG) of ETH Zurich.
Diplom in Medicine. MSc in Bioinformatics and Proteomics.
I am also a ski teacher as a hobby.