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With present computational capabilities and data volumes entering the Exascale Era, digital twins of the Earth system will be able to mimic the different system components (atmosphere, ocean, land, lithosphere) with unrivaled precision, providing analyses, forecasts, and what if scenarios for natural hazards and resources from their genesis phases and across their temporal and spatial scales. DT-GEO aims at developing a prototype for a digital twin on geophysical extremes including earthquakes, ...

Teams: WP5 - Volcanoes, WP6 - Tsunamis, WP7 - Earthquakes, WP8 - Anthropogenic geophysical extremes

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The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.

Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia

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The BeYond-COVID project (BY-COVID) aims to make COVID-19 data accessible to scientists in laboratories but also to anyone who can use it, such as medical staff in hospitals or government officials.

Pursuing to go beyond SARS-CoV-2 data, the project will serve as the groundwork to make data from other infectious diseases open and accessible to everyone.

The BY-COVID project strives to simplify data access and reuse through four key ‘pillars’:

  1. Mobilise data: ensuring ...

Teams: BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection

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Biodiversity Genomics Europe, funded by Horizon Europe call HORIZON-CL6-2021-BIODIV-01-01, aims at aligning the resources and research agendas of both DNA barcoding and reference genome generation, thus opening the door for a true quantum leap in biodiversity genomics research in Europe.

Despite ground-breaking developments in both DNA barcoding and full genome sequencing, there remains a critical need to develop and strengthen functioning communities of practice ...

Teams: Vertebrate Genomes Pipelines in Galaxy

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The Biodiversity Digital Twin prototype provides advanced models for simulation and prediction capabilities, through practical use cases addressing critical issues related to global biodiversity dynamics.

BioDT exploits the LUMI Supercomputer and employs FAIR data combined with digital infrastructure, predictive modelling and AI solutions, facilitating evidence-based solutions for biodiversity protection and restoration.

Funded by Horizon Europe call HORIZON-INFRA-2021-TECH-01-01 101057437, the ...

Teams: BioDT Use Case Ecosystem services, BioDT Use Case Biodiversity dynamics, BioDT Use Case DNA detected biodiversity, poorly known habitats, BioDT Use Case Crop wild relatives and genetic resources for food security, BioDT Use Case Invasive species, BioDT Use Case Endangered species, BioDT Use Case Disease outbreaks, BioDT Use Case Pollinators, BioDT additional pipelines

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BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. Established in 2015, the centre has grown into a major research and innovation hub for scientific computing. BioExcel develops some of the most popular applications for modelling and simulations of biomolecular systems. A broad range of additional pre-/post-processing tools are integrated with the core applications within user-friendly workflows and container solutions.

The software stack comes with ...

Teams: BioBB Building Blocks, BioExcel Best Practice Guides

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No description specified

Teams: Lake Erken modelling setup

Web page: Not specified

The goal of COVID-19-Biohackathon 2020 (COVID-19-BH20) is to develop and gather computational tools that can be useful for studying the biology of the virus and the disease.

The COVID-19 Programme in Workflow Hub aims to gather workflows for the analysis of COVID-19 molecular biology data and their metadata. In this programme, all workflows and their metadata will be curated and made interoperable, reusable and reproducible. All workflows and their metadata will be easily accessible to everyone ...

Teams: Connor Lab, GalaxyProject SARS-CoV-2, InSaFLU, nf-core viralrecon, CWL workflow SARS-CoV-2, V-Pipe, Test team

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The Distributed System of Scientific Collections is a new world-class Research Infrastructure (RI) for Natural Science Collections. The DiSSCo RI aims to create a new business model for one European collection that digitally unifies all European natural science assets under common access, curation, policies and practices that ensure that all the data is easily Findable, Accessible, Interoperable and Reusable (FAIR principles).

DiSSCo represents the largest ever formal agreement between natural ...

Teams: Specimen Data Refinery

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eFlows4HPC project aims at providing workflow software stack and an additional set of services to enable the integration of HPC simulations and modelling with big data analytics and machine learning in scientific and industrial applications. The project is also developing the HPC Workflows as a Service (HPCWaaS) methodology that aims at providing tools to simplify the development, deployment, execution and reuse of workflows. The project demonstrates its advances through three application Pillars ...

Teams: Cluster Emergent del Cervell Humà, Workflows and Distributed Computing, Pillar I: Manufacturing, Pillar II: Climate, Pillar III: Urgent computing for natural hazards, eFlows4HPC general

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