Workflows

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72 Workflows visible to you, out of a total of 72

16S_biodiversity_BIOM

Galaxy Australia

Stable

This is a Galaxy workflow that uses to convert the16S BIOM file to table and figures. It is part of the metaDEGalaxy workflow MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data.

Type: Galaxy

Creator: Mike Thang

Submitter: Mike Thang

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Created: 11th Aug 2021 at 05:12, Last updated: 11th Aug 2021 at 05:12

Trinity RNA Assembly

Australian BioCommons

Stable

A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks. This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O. By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.

Based on a pipeline by Sydney Informatics Hub: ...

Type: Nextflow

Creator: Marco De La Pierre

Submitter: Marco De La Pierre

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Created: 17th Mar 2021 at 03:01, Last updated: 26th Mar 2021 at 12:58

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