Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Shell Script1
Tag
cancer1
Gadi1
GATK41
INDELs1
Mutect21
NCI1
NCI Gadi1
NCI-Gadi1
scalable1
SNPs1
Somatic1
tumour1
variant_calling1
VCF1
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Submitter
Tracy Chew1
Space
Australian BioCommons1
Topic annotations
Genome analysis1
Operation annotations
Genome analysis1
Expression analysis7
Sequence clustering6
Sequencing quality control5
Variant calling5
De-novo assembly4
Sequence alignment4
Sequence assembly4
Taxonomic classification4
Variant filtering4
Genome assembly2
Indel detection2
Sequence assembly validation2
SNP detection2
Transcriptome assembly2
Conversion1
Differential gene expression profiling1
Gene expression profiling1
Genetic mapping1
Genome comparison1
Mapping1
Phasing1
Sequence assembly visualisation1
Sequence cutting1
Validation1
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Maturity
Work-in-progress1
Work-in-progress
Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel. ...
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