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Taxonomy classification using Kraken2 and Bracken

QCIF Bioinformatics

Work-in-progress

The aim of this workflow is to handle the routine part of shotgun metagenomics data processing. The workflow is using the tools Kraken2 and Bracken for taxonomy classification and the KrakenTools to evaluate diversity metrics. This workflow was tested on Galaxy Australia. A How-to guide for the workflow can be found at: https://github.com/vmurigneu/kraken_howto_ga_workflows/blob/main/pages/taxonomy_kraken2_wf_guide.md

Type: Galaxy

Creators: Valentine Murigneux, Mike Thang

Submitter: Valentine Murigneux

DOI: 10.48546/workflowhub.workflow.1199.2

Created: 12th Nov 2024 at 06:57, Last updated: 9th Dec 2024 at 21:51

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