Workflows

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10 Workflows visible to you, out of a total of 10

Stable

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in

This is a proposed standard operating procedure for genomic variant detection using SAMTools.

It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.

It uses Illumina RNASEQ reads and genome sequence.

Type: Common Workflow Language

Creators: None

Submitter: Ambarish Kumar

Stable

Detects SNPs and INDELs using VARSCAN2.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Detects SNPs and INDELs.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

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