Creator: Georgina Samaha
Submitter: Georgina Samaha
Exome SAMtools Workflow
Creator: Laura Rodriguez-Navas
Submitter: Laura Rodriguez-Navas
RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.
Infrastructure_deployment_metadata: Gadi (NCI)
Type: Shell Script
Creators: Tracy Chew, Rosemarie Sadsad, Cali Willet
Submitter: Tracy Chew
Author: AMBARISH KUMAR firstname.lastname@example.org; email@example.com
This is a proposed standard operating procedure for genomic variant detection using SAMTools.
It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.
It uses Illumina RNASEQ reads and genome sequence.
Type: Common Workflow Language
Submitter: Ambarish Kumar