Host contamination removal 1.0
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Download RO-Crate
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This workflows is part of the tutorial Remove contamination and host reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Paul Zierep
Tutorial Author(s): Mina Hojat Ansari, Bérénice Batut
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input paired fastq | Input paired fastq | n/a |
|
| Reference Genome Build In | Reference Genome Build In | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1 |
| 3 | Zip collections | __ZIP_COLLECTION__ |
| 4 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3 |
Version History
master
Creators and Submitter
Views: 759 Downloads: 106 Runs: 0
Created: 22nd Dec 2025 at 13:13
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Teams: Galaxy Training Network
Organizations: Galaxy
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