Introduction to DH in Galaxy
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Run on GalaxyThe workflow serves as a short introduction to Galaxy for users from the Humanities who mostly work with texts. The workflow compares two texts, visualises the differences with 'diff' and a wordcloud and extracts selected passaged for further analysis.
Associated Tutorial
This workflows is part of the tutorial Introduction to Digital Humanities in Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Daniela Schneider
Tutorial Author(s): Daniela Schneider, Rand Zoabi
Tutorial Contributor(s): Björn Grüning, Rand Zoabi, Daniela Schneider, Saskia Hiltemann
Funder(s): German Competence Center Cloud Technologies for Data Management and Processing (de.KCD)
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Text one | Input Text one | Upload a text as a .txt file that you want to compare to another text. |
|
| Input Text two | Input Text two | Upload a second text as a .txt file that you want to compare to the first text. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Remove beginning | Remove beginning1 |
| 3 | Remove beginning | Remove beginning1 |
| 4 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy0 |
| 5 | Replace | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy2 |
| 6 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy0 |
| 7 | Replace | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy2 |
| 8 | Line/Word/Character count | wc_gnu |
| 9 | Generate the first WordCloud | toolshed.g2.bx.psu.edu/repos/bgruening/wordcloud/wordcloud/1.9.4+galaxy2 |
| 10 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy0 |
| 11 | Search in textfiles | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy2 |
| 12 | Line/Word/Character count | wc_gnu |
| 13 | Generate a second WordCloud | toolshed.g2.bx.psu.edu/repos/bgruening/wordcloud/wordcloud/1.9.4+galaxy2 |
| 14 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy0 |
| 15 | Search in textfiles | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy2 |
| 16 | diff | toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.10+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| WordCloud01 | WordCloud01 | n/a |
|
| output01 | output01 | n/a |
|
| WordCloud02 | WordCloud02 | n/a |
|
| output02 | output02 | n/a |
|
| html_file | html_file | n/a |
|
Version History
master
1.0
Creators and Submitter
Views: 1638 Downloads: 281 Runs: 4
Created: 15th Sep 2025 at 14:12
Last updated: 1st Dec 2025 at 13:15
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
