Assembly of metagenomic sequencing data
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Run on GalaxyAssembly of metagenomic sequencing data
Associated Tutorial
This workflows is part of the tutorial Assembly of metagenomic sequencing data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Polina Polunina, Bérénice Batut
Tutorial Author(s): Polina Polunina, Bérénice Batut
Tutorial Contributor(s): Bérénice Batut, Saskia Hiltemann, Polina Polunina, Helena Rasche
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health
Steps
| ID | Name | Description |
|---|---|---|
| 1 | metaSPAdes | toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/4.2.0+galaxy0 |
| 2 | MEGAHIT | toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy2 |
| 3 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1 |
| 4 | CoverM contig | toolshed.g2.bx.psu.edu/repos/iuc/coverm_contig/coverm_contig/0.7.0+galaxy0 |
| 5 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.3.0+galaxy0 |
| 6 | megahit contig2fastg | toolshed.g2.bx.psu.edu/repos/iuc/megahit_contig2fastg/megahit_contig2fastg/1.1.3+galaxy1 |
| 7 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy4 |
| 8 | Bandage Info | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy2 |
| 9 | Column join | toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3 |
Version History
master
1.0
Creators and Submitter
Views: 156 Downloads: 27 Runs: 0
Created: 2nd Jun 2025 at 10:51
Last updated: 16th Jun 2025 at 14:13
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Organizations: Galaxy
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