WorkflowHub

12 items tagged with 'Jupyter notebook'.

People (12)

Sora Yonezawa

Teams: bonohulab

Organizations: Hiroshima University

https://orcid.org/0009-0004-1874-3117

Expertise: Bioinformatics

Tools: CWL, Genomics, Python, R, Transcriptomics, Jupyter notebook

Hiroshima University, Graduate School of Integrated Sciences for life, Laboratory of Genome Informatics, Ph.D student GitHub: https://github.com/yonesora56

Saim Momin

Teams: Not specified

Organizations: Not specified

https://orcid.org/0009-0003-9935-828X

Expertise: Bioinformatics, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Conda, Jupyter notebook, Python, R, Single Cell analysis, Snakemake

Francis Charette-Migneault

Teams: CRIM - Computer Research Institute of Montréal

Organizations: CRIM

https://orcid.org/0000-0003-4862-3349

Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision

Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC

Denys Savchenko

Teams: ODA, EuroScienceGateway

Organizations: MMODA

https://orcid.org/0000-0002-7664-8490

Expertise: High Performance Computing, Scientific workflow developement, Software Engineering, astronomy

Tools: Galaxy, Jupyter notebook, Python, Workflows, Git

Kateřina Storchmannová

Teams: Chemical Data Lab

Organizations: Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc

https://orcid.org/0000-0003-0285-6948

Expertise: Cheminformatics

Tools: Jupyter notebook, Python, R, Workflows

Alvaro Gargantilla Becerra

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-0429-2365

Expertise: Bioengineering, Bioinformatics, Scientific workflow developement, Systems Biology, Workflows, Computer Aided Design

Tools: Databases, Jupyter notebook, Nextflow, Python, Transcriptomics, Computational and theoretical biology, SBML, Matlab

Elisabetta Spinazzola

Teams: EOSC-Life WP3 OC Team, cross RI project, EOSC-Life WP3, Euro-BioImaging

Organizations: EOSC-Life, Euro-BioImaging

Expertise: Bioengineering, Bioinformatics, Computer Science, Data Management

Tools: Databases, Jupyter notebook, Python

Biomedical Engineer working on preclinical image dataset repository and cross researching RIs

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Elida Schneltzer

Teams: Applied Computational Biology at IEG/HMGU

Organizations: Helmholtz Zentrum München

https://orcid.org/0000-0003-4796-1661

Expertise: Software Engineering, Machine Learning, AI

Tools: Java, Jupyter notebook, Web services, Python

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Pranavathiyani G

Teams: Bioinformatics Innovation Lab

Organizations: Pondicherry University

https://orcid.org/0000-0003-4854-8238

Expertise: Bioinformatics, Systems Biology, Machine Learning

Tools: Galaxy, Cytoscape, Databases, Jupyter notebook, R, Python

Ph.D. Student at Department of Bioinformatics, Pondicherry University

Julie Ripoll

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-1590-8313

Expertise: Bioinformatics, Biostatistics, Bioengineering, Metagenomics, Scientific workflow developement, Data Management, Systems Biology, Ecophysiology

Tools: Transcriptomics, Python, Workflows, Snakemake, R, Conda, Jupyter notebook, Java, Web, Machine Learning, Databases