Workflows
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Query
Created At
Updated At
Tool
MultiQC17
SAMtools13
fastp9
gfastats8
Cutadapt7
BEDTools6
Bowtie 26
lofreq6
BUSCO5
BWA5
ggplot25
MACS5
Minimap25
snpEff5
Bandage4
BCFtools4
GenomeScope 2.04
kraken24
Merqury4
Gromacs3
iVar3
QualiMap3
ToolDistillator3
AmberTools2
Cufflinks2
MaxQuant2
Medaka2
Open Babel2
purge_dups2
RDKit2
STAR2
ABRicate1
BamTools1
BLAST1
Bracken1
Bwa-mem21
bx-python1
ChemicalToolbox1
Clair31
Clustal 2 (Clustal W, Clustal X)1
DESeq21
edgeR1
FastQC1
FastTree1
Flye1
FreeBayes1
GOseq1
Integron Finder1
ISEScan1
KrakenTools1
MetaNovo1
msConvert1
MSstats1
NanoPlot1
Newick Utilities1
PlasmidFinder1
QUAST1
Recentrifuge1
SeqCode1
shovill1
SRA Software Toolkit1
StringTie1
SuCOS1
taxonomy_krona_chart1
Unipept1
UniProt1
Vcflib1
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Workflow type
Galaxy72
Tag
covid-195
covid19.galaxyproject.org5
ABRomics4
bacterial-genomics4
ChIP4
Genomics4
ARTIC2
fasta2
FASTQ2
GTN2
Metabolomics2
MS2
paired-end2
quality2
Reviewed2
RNASEQ2
vgp2
workflow4metabolomics2
#single-cell1
AMR1
AMR-detection1
Annotation1
antibiotic-resistance1
antimicrobial resistance1
antimicrobial-resistance-genes1
Assembly1
ATACseq1
BY-COVID1
CUTnRUN1
emergen_validated1
GC-MS1
generic1
genome-annotation1
Hi-C1
iwc1
LC-MS1
metaMS1
mpxv1
name:amplicon1
name:single-cell1
ONT1
pox1
taxonomy-assignment1
trimming1
Virology1
xcms1
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Submitter
WorkflowHub Bot72
72
Workflows visible to you, out of a total of 72
Tests COVID-19: variation analysis on WGS SE data
This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.
DownloadCOVID-19: variation analysis on WGS PE data
This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.
