average-bigwig-between-replicates/main
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Tests We assume the identifiers of the input list are like: sample_name_replicateID. The identifiers of the output list will be: sample_name
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Bigwig to average | #main/Bigwig to average | We assume the identifiers are like: sample_name_replicateID |
|
| bin_size | #main/bin_size | Bin size for normalized bigwig (usually 5bp is sufficient for RNA-seq and 50bp for ChIP/CUTandRUN/ATAC) |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Apply rules | __APPLY_RULES__ |
| 3 | average bigwigs from different replicates | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_average/deeptools_bigwig_average/3.5.4+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| average_bigwigs | #main/average_bigwigs | n/a |
|
Version History
v0.1 (earliest) Created 27th Sep 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1
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v0.14623eaa
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Views: 1419
Created: 27th Sep 2023 at 03:01
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Teams: Intergalactic Workflow Commission (IWC), Vertebrate Genomes Pipelines in Galaxy, iwc
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