polish-with-long-reads/main
Version 1

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Workflow Type: Galaxy

Racon polish with long reads, x4

SEEK ID: https://workflowhub.eu/workflows/563?version=1

Inputs

ID Name Description Type
Assembly to be polished Assembly to be polished n/a
  • File
long reads long reads n/a
  • File
minimap setting (for long reads) minimap setting (for long reads) n/a
  • string

Steps

ID Name Description
3 Minimap2: map long reads to assembly Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
4 Racon: polish 1 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
5 Minimap2: map long reads to polished assembly 1 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
6 Racon: polish 2 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
7 Minimap2: map long reads to polished assembly 2 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
8 Racon: polish 3 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
9 Minimap2: map long reads to polished assembly 3 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
10 Racon: polish 4 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1

Outputs

ID Name Description Type
Assembly polished by long reads using Racon Assembly polished by long reads using Racon n/a
  • File

Version History

v0.1 (earliest) Created 8th Sep 2023 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 efe3ab9
help Creators and Submitter
Creator
  • Anna Syme
Submitter
License
MIT License
Activity

Views: 1298

Created: 8th Sep 2023 at 03:01

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Total size: 1.06 MB
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