polish-with-long-reads/main v0.1
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Tests Racon polish with long reads, x4
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly to be polished | Assembly to be polished | n/a |
|
| long reads | long reads | n/a |
|
| minimap setting (for long reads) | minimap setting (for long reads) | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Minimap2: map long reads to assembly | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 4 | Racon: polish 1 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 5 | Minimap2: map long reads to polished assembly 1 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 6 | Racon: polish 2 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 7 | Minimap2: map long reads to polished assembly 2 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 8 | Racon: polish 3 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 9 | Minimap2: map long reads to polished assembly 3 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 10 | Racon: polish 4 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly polished by long reads using Racon | Assembly polished by long reads using Racon | n/a |
|
Version History
v0.1 (earliest) Created 8th Sep 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1efe3ab9
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Views: 6396 Downloads: 8388 Runs: 2
Created: 8th Sep 2023 at 03:01
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