Workflows

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70 Workflows visible to you, out of a total of 81
Work-in-progress

Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global forcing pathway with SSP5 socioeconomic conditions. Concentration-driven. Rationale: the scenario represents the high end of plausible future pathways. SSP5 is the only SSP with emissions high enough to produce the 8.5 W/m2 level of forcing in 2100.

This workflow is answering to the following scientific question:

  • Is it worth investing in artificial snowmaking equipment ...

Type: Unrecognized workflow type

Creators: None

Submitter: Anne Fouilloux

Work-in-progress

Abstract CWL Automatically generated from the Galaxy workflow file: Workflow with Copernicus Essential Climate Variable - select and plot

Type: Galaxy

Creators: None

Submitter: Anne Fouilloux

Work-in-progress

CWL workflow for NMR spectra Peak Picking The workflow takes as input a series of 2D 1H 15N HSQC NMR spectra and uses nmrpipe tools to convert the spectra in nmrpipe format and performs an automatic peak picking. This test uses a protein MDM2 with different ligands and peptide and generates a peak list with 1H and 15N chemical shift values for each spectrum. The difference among these peak lists can be used to characterize the ligand binding site on the protein.

Type: Common Workflow Language

Creators: None

Submitter: Andrea Giachetti

Stable

The workflow runs the RetroSynthesis algorithm to generate a collection of heterologous pathways in a host organism of choice, converts them to SBML files, performs analysis on the pathways to then rank the theoretical best performing ones.

Type: Galaxy

Creator: Melchior du Lac

Submitter: Melchior du Lac

Stable

Generate possible metabolic routes for the production of a target molecule in an organism of choice

Type: Galaxy

Creator: Melchior du Lac

Submitter: Melchior du Lac

Stable

This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism

Type: Galaxy

Creator: Melchior du Lac

Submitter: Melchior du Lac

Stable

Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.

Type: Galaxy

Creator: Melchior du Lac

Submitter: Melchior du Lac

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