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2 Workflows matching the given criteria: (Clear all filters)

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MC_COVID19like_Assembly_Reads

Italy-Covid-data-Portal

Work-in-progress

This WF is based on the official Covid19-Galaxy assembly workflow as available from https://covid19.galaxyproject.org/genomics/2-assembly/ . It has been adapted to suit the needs of the analysis of metagenomics sequencing data. Prior to be submitted to INDSC databases, these data need to be cleaned from contaminant reads, including reads of possible human origin.

The assembly of the SARS-CoV-2 genome is performed using both the Unicycler and the SPAdes assemblers, similar to the original WV.

To ...

Type: Galaxy

Creators: None

Submitter: Matteo Chiara

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Created: 4th Nov 2020 at 18:35, Last updated: 5th Nov 2020 at 07:42

ONT - Workflow-Wick-et.al.

NanoGalaxy

Genome assembly: Unicycler-based WF for Klebsiella pneumoniae [Wick et al. Microbial genomics 2017]

Type: Galaxy

Creator: Milad Miladi

Submitter: Willem de Koning

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Created: 5th Aug 2020 at 14:03

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