Workflows

QualiMap1 fastp9 BWA7 MaBoSS7 Minimap27 PhysiCell7 BLAST6 FastQC6 Galaxy6 kraken26 BCFtools5 MultiQC5 shovill5 R4 SAMtools4 Seurat4 SPAdes4 taxonomy_krona_chart4 Bowtie 23 BUSCO3 cisTEM3 Konstanz Information Miner (KNIME)3 MotionCor23 Scipion3 Variant Effect Predictor (VEP)3 anndata2 BBMap2 CellProfiler2 ChiRA2 Cutadapt2 Flye2 MACS2 nanopolish2 NGSUtils2 picard_samtofastq2 PredPrIn2 QUAST2 seqtk2 Snakemake2 SnpSift2 Unicycler2 VADR2 vardict2 vcfanno2 vcfutils2 XMIPP2 ABRicate1 AdapterRemoval1 AnnotSV1 Bandage1 BEDTools1 Bioconductor1 Biopython1 BlobToolKit1 BRAKER11 bx-python1 CARNIVAL1 cBioPortal1 CheckM1 clusterProfiler1 CNVkit1 COMBAT-TB Workbench1 decoupleR1 Delly21 DESeq21 Filtlong1 FLASH1 FreeBayes1 funannotate1 GADES1 Galaxy Image Analysis1 GATK1 gblocks1 GBMatch - GBMPredictor1 GenomeScope 2.01 GetOrganelle1 ggtree1 GSEA1 hAMRonization1 Hifiasm1 htseqcount1 ImageJ21 Infernal1 iqtree1 lofreq1 MAFFT1 Mash1 MaxBin1 Merqury1 Meryl1 MetaBAT 21 MitoHiFi1 MITOS1 MOB-suite1 MolMeDB1 NanoPlot1 ngsReports1 OBITools1 PhysiBoSS1 pilon1 PLINK1 Prodigal1 progeny1 protexcluder1 purge_dups1 Racon1 RDKit1 RepeatMasker1 RepeatModeler1 SCANPY1 scikit-image1 SemiBin1 seqkit1 SeqSero21 SISTR1 snippy1 STAR1 staramr1 StringTie1 TaxonKit1 tb-profiler1 Trim Galore1 varlociraptor1 VarScan1 WGCNA1 More...

Galaxy1

pathogen1 tuberculosis1

Peter van Heusden1

SANBI Pathogen Bioinformatics1

Independent Teams1

Genetic variation1 Infectious disease1 Microbiology1 Public health and epidemiology1 Sequence assembly1

Stable1