Workflow Type: Galaxy

Run baredSC in 1 dimension in logNorm for 1 to N gaussians and combine models.

Inputs

ID Name Description Type
Gene name Gene name Must be included in the first row of the tabular
  • string
Maximum number of Gaussians to study Maximum number of Gaussians to study Usually 4 is enough
  • int
Maximum value in logNorm Maximum value in logNorm Maximum value to explore in logNorm
  • float
Tabular with raw expression values Tabular with raw expression values The dataset must have a first row with row names. Among them should be 'nCount_RNA' and the gene you want to get PDF of.
  • File

Steps

ID Name Description
4 generate_param_list_one_to_number n/a
5 baredSC toolshed.g2.bx.psu.edu/repos/iuc/baredsc_1d/baredsc_1d/1.1.2+galaxy1
6 combine baredSC 1d toolshed.g2.bx.psu.edu/repos/iuc/baredsc_combine_1d/baredsc_combine_1d/1.1.2+galaxy1

Outputs

ID Name Description Type
baredsc_qc_plots baredsc_qc_plots n/a
  • File
baredsc_neff baredsc_neff n/a
  • File
baredsc_numpy baredsc_numpy n/a
  • File
combined_pdf combined_pdf n/a
  • File
combined_plot combined_plot n/a
  • File
combined_other_outputs combined_other_outputs n/a
  • File

Version History

v0.4 (latest) Created 10th Apr 2024 at 03:01 by WorkflowHub Bot

Updated to v0.4


Frozen v0.4 de49795

v0.3 Created 7th Mar 2024 at 03:02 by WorkflowHub Bot

Updated to v0.3


Frozen v0.3 5439f4d

v0.2 Created 6th Dec 2023 at 03:01 by WorkflowHub Bot

Updated to v0.2


Frozen v0.2 e464cbf

v0.1 (earliest) Created 21st Oct 2023 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 51a4752
help Creators and Submitter
Creator
  • Lucille Delisle
Submitter
License
Activity

Views: 1591

Created: 21st Oct 2023 at 03:01

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