Workflow Type: Galaxy
Frozen
Run baredSC in 1 dimension in logNorm for 1 to N gaussians and combine models.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Gene name | Gene name | Must be included in the first row of the tabular |
|
Maximum number of Gaussians to study | Maximum number of Gaussians to study | Usually 4 is enough |
|
Maximum value in logNorm | Maximum value in logNorm | Maximum value to explore in logNorm |
|
Tabular with raw expression values | Tabular with raw expression values | The dataset must have a first row with row names. Among them should be 'nCount_RNA' and the gene you want to get PDF of. |
|
Steps
ID | Name | Description |
---|---|---|
4 | generate_param_list_one_to_number | n/a |
5 | baredSC | toolshed.g2.bx.psu.edu/repos/iuc/baredsc_1d/baredsc_1d/1.1.3+galaxy0 |
6 | combine baredSC 1d | toolshed.g2.bx.psu.edu/repos/iuc/baredsc_combine_1d/baredsc_combine_1d/1.1.3+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
baredsc_qc_plots | baredsc_qc_plots | n/a |
|
baredsc_neff | baredsc_neff | n/a |
|
baredsc_numpy | baredsc_numpy | n/a |
|
combined_pdf | combined_pdf | n/a |
|
combined_plot | combined_plot | n/a |
|
combined_other_outputs | combined_other_outputs | n/a |
|
Version History
v0.1 (earliest) Created 21st Oct 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
51a4752
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Views: 2907 Downloads: 437 Runs: 0
Created: 21st Oct 2023 at 03:01
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