GermlineStructuralV-nf Version 1
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Download RO CrateGermlineStructuralV-nf is a pipeline for identifying structural variant events in human Illumina short read whole genome sequence data. GermlineStructuralV-nf identifies structural variant and copy number events from BAM files using Manta, Smoove, and TIDDIT. Variants are then merged using SURVIVOR, and annotated by AnnotSV. The pipeline is written in Nextflow and uses Singularity/Docker to run containerised tools.
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main @ 45954a4 (earliest) Created 31st Jan 2023 at 23:40 by Georgina Samaha
Merge pull request #15 from Sydney-Informatics-Hub/betarelease
Beta release complete
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Created: 31st Jan 2023 at 23:40
Last updated: 18th Dec 2023 at 05:36
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Teams: Sydney Informatics Hub
Organizations: The University of Sydney
Teams: Sydney Informatics Hub
Organizations: Australian BioCommons
https://orcid.org/0000-0003-0419-1476
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia
Web page: https://www.biocommons.org.au/
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Space: Australian BioCommons
Public web page: https://www.biocommons.org.au/
The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...
Space: Australian BioCommons
Public web page: https://www.sydney.edu.au/sydney-informatics-hub
