Plot-Nx-Size/main
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Tests Generate Nx and Size plot for multiple assemblies
Inputs
Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.
Outputs
- Nx plot
- Size plot
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Collection of genomes to plot | #main/Collection of genomes to plot | Name the items inside the collection with the names you want to appear on the plot |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | gfastats | toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0 |
| 2 | Sort | sort1 |
| 3 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy0 |
| 4 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0 |
| 5 | Add column | toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1 |
| 6 | Parse parameter value | param_value_from_file |
| 7 | Compose text parameter value | toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1 |
| 8 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 |
| 9 | Add input name as column | toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0 |
| 10 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0 |
| 11 | Cut | Cut1 |
| 12 | Cut | Cut1 |
| 13 | Nx Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
| 14 | Size Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Nx Plot | #main/Nx Plot | n/a |
|
| Size Plot | #main/Size Plot | n/a |
|
| gfastats data for plotting | #main/gfastats data for plotting | n/a |
|
Version History
v0.1.8 (latest) Created 26th Aug 2025 at 03:02 by WorkflowHub Bot
Updated to v0.1.8
Frozen
v0.1.8b6095c1
v0.1 (earliest) Created 24th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
6abb355
Creators and Submitter
Views: 7722 Downloads: 50280 Runs: 0
Created: 24th Jun 2024 at 03:01
Last updated: 26th Mar 2025 at 10:06
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