Plot-Nx-Size/main

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Workflow Type: Galaxy

Generate Nx and Size plot for multiple assemblies

Inputs

Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.

Outputs

  1. Nx plot
  2. Size plot

SEEK ID: https://workflowhub.eu/workflows/1057?version=1

Inputs

ID Name Description Type
Collection of genomes to plot #main/Collection of genomes to plot Name the items inside the collection with the names you want to appear on the plot
  • array containing
    • File

Steps

ID Name Description
1 gfastats toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0
2 Sort sort1
3 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2
4 Datamash toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0
5 Add column toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1
6 Parse parameter value param_value_from_file
7 Compose text parameter value toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1
8 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0
9 Add input name as column toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0
10 Collapse Collection toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0
11 Cut Cut1
12 Cut Cut1
13 Nx Plot toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1
14 Size Plot toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1

Outputs

ID Name Description Type
Nx Plot #main/Nx Plot n/a
  • File
Size Plot #main/Size Plot n/a
  • File
gfastats data for plotting #main/gfastats data for plotting n/a
  • File

Version History

v0.1.1 (latest) Created 28th Jun 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1.1


Frozen v0.1.1 f14dcc4

v0.1 (earliest) Created 24th Jun 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 6abb355
help Creators and Submitter
Creator
  • Delphine Lariviere
Additional credit

VGP

Submitter
Tools
gfastats
ggplot2
License
No license - no permission to use unless the owner grants a licence
Activity

Views: 1286   Downloads: 239   Runs: 0

Created: 24th Jun 2024 at 03:01

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Total size: 36.4 KB
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