Workflows

Updated tool versions Aug 24 2022

Associated Tutorial

This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy ...

introduction

Associated Tutorial

This workflows is part of the tutorial How to reproduce published Galaxy analyses, available in the GTN

Thanks to...

Tutorial Author(s): Melanie Föll, Anne Fouilloux ...

Identification of AMR genes in an assembled bacterial genome

Associated Tutorial

This workflows is part of the tutorial Identification of AMR genes in an assembled bacterial genome, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Pathogens of all samples report generation and visualization

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

• Includes a [Galaxy Workflow ...

Downstream Single-cell RNA Plant analysis with ScanPy

Associated Tutorial

This workflows is part of the tutorial Analysis of plant scRNA-Seq Data with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Data Manipulation Olympics

Associated Tutorial

This workflows is part of the tutorial Data Manipulation Olympics, available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, Yongbin Li ...

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Associated Tutorial

This workflows is part of the tutorial Long non-coding RNAs (lncRNAs) annotation with FEELnc, available in the GTN

Thanks to...

Workflow Author(s): Stéphanie Robin

Tutorial Author(s): Stéphanie Robin ...

Microbiome - Taxonomy Profiling

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Interpreting MaxQuant data using MSstats involves applying a rigorous statistical framework to glean meaningful insights from quantitative proteomic datasets

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 5: Data Interpretation, available in the GTN

Thanks to...

Workflow Author(s): ...

A short introduction to Galaxy

Associated Tutorial

This workflows is part of the tutorial A short introduction to Galaxy, available in the GTN

Thanks to...

Tutorial Author(s): Anna Syme, Nicola Soranzo ...