Workflows

This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN

Features

• Includes [Galaxy Workflow ...

Quantification using the MaxQuant tool

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 4: Quantitation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

This workflow query metagenomic raw data against a metaplasmidome database to identify plasmids and annotate them with genes, KO, PFAM

Associated Tutorial

This workflows is part of the tutorial Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data, available in the GTN ...

Proteogenomics 3: Novel peptide analysis

Associated Tutorial

This workflows is part of the tutorial Proteogenomics 3: Novel peptide analysis, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

...

16S Microbial Analysis with mothur (extended)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (extended), available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, [Bérénice ...

WF3- Peptide verification/validaiton workflow

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 3: Verification, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

DIA Analysis Training using HEK Ecoli data in OSW

Associated Tutorial

This workflows is part of the tutorial DIA Analysis using OpenSwathWorkflow, available in the GTN

Thanks to...

Tutorial Author(s): Matthias Fahrner, [Melanie ...

DIA MSstats Training msstats input tabular

Associated Tutorial

This workflows is part of the tutorial Statistical analysis of DIA data, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Matthias ...

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 1: Database-Generation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): [Subina ...

Workflow for running LotuS2 tool on fungal ITS paired-end sequencing data, to identify the fungi present in the samples

Associated Tutorial

This workflows is part of the tutorial Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2, available in the GTN

Features

• Includes [Galaxy Workflow ...