Workflows
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Query
Created At
Updated At
Tool
BWA7
fastp7
MaBoSS7
PhysiCell7
BLAST5
Minimap25
BCFtools4
FastQC4
Galaxy4
kraken24
R4
Seurat4
shovill4
taxonomy_krona_chart4
Bowtie 23
cisTEM3
MotionCor23
MultiQC3
SAMtools3
Scipion3
SPAdes3
Variant Effect Predictor (VEP)3
CellProfiler2
ChiRA2
Cutadapt2
nanopolish2
NGSUtils2
picard_samtofastq2
PredPrIn2
seqtk2
SnpSift2
Unicycler2
VADR2
vardict2
vcfanno2
vcfutils2
XMIPP2
AdapterRemoval1
Bandage1
BBMap1
BEDTools1
Bioconductor1
BRAKER11
BUSCO1
bx-python1
CARNIVAL1
cBioPortal1
decoupleR1
Delly21
DESeq21
Filtlong1
FLASH1
Flye1
FreeBayes1
funannotate1
GATK1
htseqcount1
Infernal1
lofreq1
MACS1
MOB-suite1
ngsReports1
OBITools1
PhysiBoSS1
pilon1
PLINK1
progeny1
protexcluder1
Racon1
RepeatMasker1
RepeatModeler1
SeqSero21
SISTR1
STAR1
StringTie1
Trim Galore1
varlociraptor1
VarScan1
More...
Workflow type
Galaxy71
Common Workflow Language36
Nextflow27
Snakemake26
Python13
Jupyter11
Workflow Description Language6
Bpipe5
KNIME5
COMPSs5
Scipion5
R markdown3
Autosubmit1
Perl1
Pi1
Rbbt1
More...
Tag
Bioinformatics23
Galaxy12
Genomics11
Transcriptomics11
covid-1910
image processing10
Assembly9
Nextflow9
CWL8
imaging8
rna-seq8
workflow8
cancer7
Machine Learning7
Python7
variant calling7
Annotation6
SARS-CoV-26
vgp6
Alignment5
bpipe5
groovy5
Metagenomics5
pediatric5
Proteomics5
rna5
Climate4
copernicus4
helicase4
jupyter4
molecular dynamics4
nanopore4
ONT4
Retrosynthesis4
rna virus4
variant_calling4
Virology4
astronomy3
binning3
Classification3
cryoem3
EOSC4Cancer3
FAIR workflows3
generic3
OME-Zarr3
Pathway Analysis3
pathway prediction3
rare diseases3
RNASEQ3
S33
SANBI3
scipion3
scRNA-seq3
Snakemake3
SNPs3
spa3
Virus3
Workflows3
16S2
Amplicon2
antimicrobial resistance2
bioimaging2
CellProfiler2
Cheminformatics2
ChIP-seq2
CODEX22
coronavirus2
cosifer2
covid19.galaxyproject.org2
dengue2
DE_NOVO2
Electron microscopy2
Epigenomics2
ExomeDepth2
exploration2
gene set enrichment analysis2
genome_assembly2
Germline2
GWAS2
identification2
illumina2
kallisto2
kraken2
linkage_map2
manta2
MERS2
metabolic engineering2
Metabolomics2
mirna prediction2
name:ONT2
NSP132
pathway design2
personalized medicine2
Pipeline2
protein2
Semantic Network Analysis2
STAR2
structural variants2
Synthetic Biology2
TransBioNet2
WDL2
west nile2
zika2
10.3390/microorganisms100202921
18S1
ABR1
air-quality1
Alternative splicing1
AMR1
AMR-detection1
ARTIC1
automated workflows1
bash1
Behavioral data1
benchmarking1
BGE1
Biodiversity1
bioformats1
bioformats2raw1
Bioimage1
Biomedical Ontologies1
BioStudies1
blast1
bowtie21
BWA1
carveme1
CATH1
Cellranger1
cmip61
community-detection1
Community_metrics1
Compomics1
Conversion1
Darwin core1
data annotation1
data fusion1
data integration1
Data package1
data retrieval and transformation1
data transformation1
data wrangling1
Databases1
DataOne1
Deep learning1
disease outcome prediction1
DL1
DNA-seq1
Domain-Domain interaction1
dRNAseq1
durg response simulation1
earth observation1
Ecological metadata language1
Ecology1
eDNA1
EML1
eml-annotation1
eosc-nordic1
ERGA1
FAIR1
fastp1
FastQC1
featurecounts1
file conversion1
filtering1
Galaxy-E1
GATK31
GATK41
GEM1
gene expression correlation1
gene expression data wrangling1
Gene ontology term sets similarity1
Gene Prioritization1
genetic design1
genome-annotation1
genomic ancestry1
geo database mining1
GLM1
gnps1
Gravitational Waves1
GRIDS1
GRIDSS1
GTN1
GUI1
high-throughput1
high-throughput_sequencing_analysis1
hmdb1
host-pathogen PPIs1
HPC1
image file format1
imageJ1
ITS1
Knime1
LiftOver1
Luigi & Rufus workflow1
MAG1
mapping1
MARS-seq1
mass-spectrometry1
massbank1
MaxQuant1
memote1
Metabarcoding1
metagenome1
metatranscriptomics1
microbial1
microscopy1
mlxv1
Modeling1
mpvx1
mpxv1
Multi-omics1
MultiQC1
Multivariate1
name:ILLUMINA1
ncbi sra1
ndvi1
networks1
NGFF1
NGS1
non-coding1
Non-parametric1
nonspliced1
NS31
observation1
OME-TIFF1
openebench1
paired-end1
pangenome1
pangeo1
Parsl1
pathogenicity score1
Pathway co-occurrence1
Perl1
Permeability1
Pfam1
phylogenetics1
polygenic risk score1
polygenic score1
prediction1
Presence_absence1
Proline1
Protein domains1
protein interactin data triplification1
protein interactions database integration1
Protein-Protein Interaction1
Protein-Protein interaction prediction1
proteins network augmentation1
public cancer datasets exploration1
QTL mapping1
quality1
radio interferometry1
rdkit1
reads_selection1
reads_simulation1
Reconstruction1
Regulatory Mendelian Mutation score1
RELIANCE1
ReMM1
Report1
sambamba1
SAMTools1
scientific publication text mining1
Semantic Comparison1
Semantic Interpretation1
sentinel-2 data1
sequence annotation1
sequence search1
SIM1
single particle analysis1
single-end1
SKA1
smart-seq 21
Species abundance1
spectra1
Statistics1
SV1
tcga1
Tomography1
Toxicology1
Trans-Proteomic1
validaiton o protein interaction predictions1
variant1
variant pathogenicity prediction1
VCF1
More...
Submitter
Yvan Le Bras11
Laura Rodriguez-Navas9
Anne Fouilloux8
Bart Nijsse8
Jean-Marie Burel8
Miguel Vazquez8
Yasmmin Martins7
Cristóbal Gallardo6
Jasper Koehorst5
Sergi Sayols5
Melchior du Lac4
Willem de Koning4
johan Rollin4
Dennis Dollée4
Konstantinos Kyritsis4
Bryan Raubenolt4
Peter van Heusden3
Irene Sánchez3
Juma Bayjan3
Wolfgang Maier3
Anton Nekrutenko3
Jeanette Reinshagen3
Pablo Riesgo Ferreiro3
Daniel Marchan3
Oliver White3
Luca Pireddu2
Beatriz Serrano-Solano2
Pavankumar Videm2
Ross Thorne2
Volodymyr Savchenko2
Johannes Köster2
thodk2
Elida Schneltzer2
Pasi Korhonen2
Kary Ocaña2
Cristiane Taniguti2
Peter Menzel2
Adam Tofilski2
Tina Tian2
Daan Hazelaar2
Andrea Furlani2
Fabrice Touzain2
Nathaniel Matteson2
Stian Soiland-Reyes1
Laura del Cano1
Douglas Lowe1
ignacio eguinoa1
Andrea Giachetti1
Michael R. Crusoe1
Matteo Chiara1
Carlos Oscar Sorzano Sanchez1
phytopat gembloux1
johan Rollin1
Julian Uszkoreit1
Dennis Hendriksen1
Daphne Wijnbergen1
Patrick Durand1
Cyril Noel1
Javier Moldon1
Oliver Woolland1
Bianca Pasat1
Rob Edwards1
Valentin Tilloy1
Michael Roach1
Ryan Patterson-Cross1
Alexander Botzki1
panou@fleming.gr Panou1
Haris Zafeiropoulos1
Kaur Alasoo1
Hrishikesh Dhondge1
Marvin Martens1
Naga Kasinadhuni1
Casper de Visser1
Samuel Lambert1
bugra oezdemir1
Max Schubach1
Luc Cornet1
Felicita Gernhardt1
Nico Trummer1
Ang Guo1
Diego Garrido-Martín1
Roderic Guigó1
Bruno P. Kinoshita1
Luca Cozzuto1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Tom Brown1
Elisabetta Spinazzola1
Anand Maurya1
Agata Kilar1
Vincent Hervé1
Akshay Akshay1
Davide Gurnari1
David Yuan1
Daniel Clarke1
Justin Sonneck1
Yi Sun1
Bram Danneels1
Zafran Hussain Shah1
Denys Savchenko1
Kateřina Storchmannová1
Michael Hall1
Rafael Terra1
Dominik Lux1
More...
Team
usegalaxy-eu14
UNLOCK13
PNDB11
Galaxy Climate8
OME8
PerMedCoE8
IBISBA Workflows7
yPublish - Bioinfo tools7
Integrated and Urban Plant Pathology Laboratory6
IMBforge5
UX trial team5
iPC: individualizedPaediatricCure5
NanoGalaxy4
EJPRD WP13 case-studies workflows4
Seq4AMR4
Biodata Analysis Group4
Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4
SARS-CoV-2 Data Hubs3
ODA3
CO2MICS Lab3
EU-Openscreen3
TRON gGmbH3
Euro-BioImaging3
SANBI Pathogen Bioinformatics3
Scipion CNB3
NHM Clark group3
SeBiMER2
Snakemake-Workflows2
Applied Computational Biology at IEG/HMGU2
INFRAFRONTIER workflows2
TransBioNet2
CRC Cohort2
Workflows Australia2
Medizinisches Proteom-Center, Medical Bioinformatics2
Air Quality Prediction2
Read2Map2
ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2
Apis-wings2
Workflows for geographic science2
Katdetectr2
ANSES-Ploufragan2
CholGen2
Peter Menzel's Team2
NMR Workflow1
COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1
Italy-Covid-data-Portal1
Genomics Coordination Center1
IAA-CSIC1
FAME1
CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1
HecatombDevelopment1
OpenEBench1
Bioinformatics and Biostatistics (BIO2 ) Core1
VIB Bioinformatics Core1
Single Cell Unit1
emo-bon1
CINECA1
Toxicology community1
AGRF BIO1
X-omics1
CAPSID1
KircherLab1
BCCM_ULC1
Computational Science at HZDR1
Big data in biomedicine1
TRE-FX1
Guigó lab1
Statistical genetics1
Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1
Bioinformatics Unit @ CRG1
BSC-CES1
ELIXIR Proteomics1
Black Ochre Data Labs1
Zavolan Lab1
Metabolomics-Reproducibility1
NGFF Tools1
Bioinformatics workflows for life science1
EOSC-Life WP3 OC Team, cross RI project1
ARA-dev1
Mendel Centre for Plant Genomics and Proteomics1
Metagenomic tools1
Polygenic Score Catalog1
MLme: Machine Learning Made Easy1
Dioscuri TDA1
NIH CFDE Playbook Workflow Partnership1
MMV-Lab1
EMBL-CBA1
EBP-Nor1
Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1
Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1
Chemical Data Lab1
Pangenome database project1
HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1
More...
Creator
Bart Nijsse13
Jasper Koehorst12
Yvan Le Bras10
Laura Rodriguez-Navas8
Jean-Marie Burel8
Delphine Lariviere6
Coline Royaux5
Sergi Sayols5
Melchior du Lac4
José Mª Fernández4
Bryan Raubenolt4
Juma Bayjan3
Friederike Ehrhart3
Ozan Ozisik3
Patrick Durand3
Laura Leroi3
Germán Royval3
Cenna Doornbos3
Jeanette Reinshagen3
Konstantinos Kyritsis3
Luca Pireddu2
Douglas Lowe2
Michael R. Crusoe2
Pavankumar Videm2
Julian Uszkoreit2
Alexandre Cormier2
Cyril Noel2
Pierre Cuzin2
Volodymyr Savchenko2
Philipp Gormanns2
Kary Ocaña2
Cristiane Taniguti2
Peter Menzel2
Diego Garrido-Martín2
Roderic Guigó2
Andrea Furlani2
Denys Savchenko2
Stian Soiland-Reyes1
Martin Beracochea1
Anne Fouilloux1
Matthias Haimel1
Carlos Oscar Sorzano Sanchez1
Oliver Woolland1
Johannes Köster1
Valentin Tilloy1
Michael Roach1
Elida Schneltzer1
Luiz Gadelha1
Asier Gonzalez-Uriarte1
Woosub Shin1
Ryan Patterson-Cross1
Haris Zafeiropoulos1
Hrishikesh Dhondge1
Pasi Korhonen1
Marvin Martens1
Tazro Inutano1
Casper de Visser1
Benjamin Wingfield1
Anna Niehues1
Marie-Dominique Devignes1
Samuel Lambert1
Lucas Cruz1
Pablo Riesgo Ferreiro1
Felicita Gernhardt1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Veit Schwämmle1
Luiz Gadelha1
Vasiliki Panagi1
Elisabetta Spinazzola1
Agata Kilar1
Akshay Akshay1
Phuong Doan1
Davide Gurnari1
David Yuan1
Justin Sonneck1
Zafran Hussain Shah1
Michael Hall1
Rafael Terra1
Dominik Lux1
More...
Collection
IDR6
CEITEC CryoEM Facility Workflows3
TronFlow2
Vertebrate Genomes Pipelines (VGP) workflows2
Workflows in EuroScienceGateway2
Topic annotations
Bioinformatics17
Biodiversity8
Ecology8
Biomedical science6
Genetic variation6
Metagenomics6
Biological databases4
Sequence analysis4
Bioimaging3
Compound libraries and screening3
Drug discovery3
Imaging3
Metagenomic sequencing3
Oncology3
Preclinical and clinical studies3
Protein interactions3
Sample collections3
Sequence assembly3
Data integration and warehousing2
Data mining2
Data quality management2
Genomics2
Protein interaction experiment2
Proteomics2
Quantitative genetics2
Rare diseases2
Sequencing2
Virology2
Workflows2
ChIP-seq1
Computer science1
Data submission, annotation and curation1
DNA polymorphism1
Environmental science1
Epigenomics1
Gene expression1
Gene structure1
Gene transcripts1
Genetics1
Human genetics1
Machine learning1
Medical imaging1
Medical informatics1
Metabolomics1
Metatranscriptomics1
Molecular genetics1
Molecular interactions, pathways and networks1
Ontology and terminology1
Phylogenetics1
Physics1
Protein folds and structural domains1
Protein variants1
Transcriptomics1
More...
Operation annotations
Variant calling6
Annotation3
Data retrieval3
Protein interaction network analysis3
Sequence assembly3
Sequencing quality control3
Variant classification3
Variant filtering3
Gene-set enrichment analysis2
Haplotype mapping2
Modelling and simulation2
Prediction and recognition2
Protein interaction network prediction2
SNP annotation2
Analysis1
Calculation1
Clustering1
Conversion1
Correlation1
Data handling1
Dimensionality reduction1
DNA barcoding1
Enrichment analysis1
Expression correlation analysis1
Format detection1
Genome assembly1
ID mapping1
Image analysis1
Metabolic pathway prediction1
Named-entity and concept recognition1
Network analysis1
Peptide identification1
Protein identification1
Protein-protein interaction analysis1
Relation extraction1
RNA-Seq analysis1
Sequence contamination filtering1
Taxonomic classification1
Text annotation1
Text mining1
Transcription factor binding site prediction1
Weighted correlation network analysis1
More...
Tests
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