Workflows

This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN

Features

• Includes [Galaxy Workflow ...

Checking expected species and contamination in bacterial isolate

Associated Tutorial

This workflows is part of the tutorial Checking expected species and contamination in bacterial isolate, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Identification of AMR genes in an assembled bacterial genome

Associated Tutorial

This workflows is part of the tutorial Identification of AMR genes in an assembled bacterial genome, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Binning workflows that uses abundance information and performs binning of metagenomic contigs using 4 different binners as well as bin refinement.

Associated Tutorial

This workflows is part of the tutorial Binning of metagenomic sequencing data, available in the GTN

Features

• Includes [Galaxy Workflow ...

The workflow serves as a short introduction to Galaxy for users from the Humanities who mostly work with texts.

Associated Tutorial

This workflows is part of the tutorial Introduction to Digital Humanities in Galaxy, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Associated Tutorial

This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Workflow for the Galaxy Training Network tutorial "Hybrid genome assembly - Nanopore and Illumina"

Associated Tutorial

This workflows is part of the tutorial Hybrid genome assembly - Nanopore and Illumina, available in the GTN

Features

• Includes Galaxy Workflow Tests ...