Workflows

What is a Workflow?

82 Workflows visible to you, out of a total of 82

sars-cov-2-se-illumina-wgs-variant-calling/COVID-19-SE-WGS-ILLUMINA

Intergalactic Workflow Commission (IWC)

Tests Passing

COVID-19: variation analysis on WGS SE data

This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.

Type: Galaxy

Creator: Wolfgang Maier

Submitter: WorkflowHub Bot

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Created: 12th Mar 2021 at 13:41, Last updated: 21st Dec 2021 at 03:01

Views: 4090, Downloads: 511

sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA

Intergalactic Workflow Commission (IWC)

Tests Passing

COVID-19: variation analysis on WGS PE data

This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.