Workflow Type: Galaxy
Frozen
This workflow will perform taxonomic and functional annotations using Unipept and statistical analysis using MSstatsTMT.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Annotation | Annotation | Annotation file for MSstatsTMT |
|
Comparison Matrix | Comparison Matrix | Comparison matrix for MSstatsTMT |
|
MaxQuant Evidence | MaxQuant Evidence | Evidence file from MaxQuant |
|
MaxQuant Protein Groups | MaxQuant Protein Groups | MaxQuant Protein Groups |
|
Quantified Peptides | Quantified Peptides | Quantified peptides from MaxQuant |
|
Steps
ID | Name | Description |
---|---|---|
5 | Unipept | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.1 |
6 | Microbial Proteins | Grep1 |
7 | Select | Grep1 |
8 | MSstatsTMT_for_microbial_proteins | MSstatsTMT analysis for microbial proteins toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1 |
9 | Human Proteins | Grep1 |
10 | MSstatsTMT_for_human_proteins | MSstatsTMT analysis for human proteins toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Microbial InterPro Outputs | Microbial InterPro Outputs | n/a |
|
Microbial Taxonomy Tree | Microbial Taxonomy Tree | n/a |
|
Microbial EC Proteins Tree | Microbial EC Proteins Tree | n/a |
|
Microbial EC Terms Output | Microbial EC Terms Output | n/a |
|
Microbial GO Terms Output | Microbial GO Terms Output | n/a |
|
Unipept peptinfo | Unipept peptinfo | n/a |
|
Microbial Proteins | Microbial Proteins | n/a |
|
Microbial Proteins Comparison Plot | Microbial Proteins Comparison Plot | n/a |
|
Microbial Proteins Volcano Plot | Microbial Proteins Volcano Plot | n/a |
|
Human Proteins | Human Proteins | n/a |
|
Human Proteins Volcano Plot | Human Proteins Volcano Plot | n/a |
|
Human Proteins Comparison Plot | Human Proteins Comparison Plot | n/a |
|
Version History
v0.1 (earliest) Created 26th Nov 2024 at 03:02 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
077029f
Creators and Submitter
Creators
Not specifiedAdditional credit
GalaxyP
Submitter
Activity
Views: 129 Downloads: 16 Runs: 6
Created: 26th Nov 2024 at 03:02
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Attributions
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