goseq/main

ID	Name	Description	Type
Differential expression result	#main/Differential expression result	input1: table with two columns. 1 gene 2 T/F based on Differential Expression Analysis	File
KEGG pathways	#main/KEGG pathways	a table with two columns: 1. Pathway ID 2. Pathway name like: ID Name 01100 Metabolic pathways - mmus 01200 Carbon metabolism - mmus you can get it from KEGG https://rest.kegg.jp/list/pathway/mmu	File
Select gene ID format	#main/Select gene ID format	Select the format of your genes	string
Select genome to use	#main/Select genome to use	Select which genome your data is from	string
gene length	#main/gene length	input2: table with two columns. 1 gene 2 gene length	File

ID	Name	Description
5	goseq - Cellular Component	input1: table with two columns. 1 gene 2 T/F based on DEA input2: table with two columns. 1 gene 2 gene length toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
6	goseq - Biological Process	input1: table with two columns. 1 gene 2 T/F based on DEA (is it DEG?) input2: table with two columns. 1 gene 2 gene length toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
7	goseq - Molecular Function	input1: table with two columns. 1 gene 2 T/F based on DEA (is it DEG?) input2: table with two columns. 1 gene 2 gene length toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
8	goseq - KEGG	input1: table with two columns. 1 gene 2 T/F based on DEA (is it DEG?) input2: table with two columns. 1 gene 2 gene length toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
9	Join two Datasets	join1

ID	Name	Description	Type
goseq Differential Genes in each Category (Biological Process)	#main/goseq Differential Genes in each Category (Biological Process)	n/a	File
goseq Differential Genes in each Category (Cellular Component)	#main/goseq Differential Genes in each Category (Cellular Component)	n/a	File
goseq Differential Genes in each Category (KEGG)	#main/goseq Differential Genes in each Category (KEGG)	n/a	File
goseq Differential Genes in each Category (Molecular Function)	#main/goseq Differential Genes in each Category (Molecular Function)	n/a	File
goseq Enrichment Table (Biological Process)	#main/goseq Enrichment Table (Biological Process)	n/a	File
goseq Enrichment Table (Cellular Component)	#main/goseq Enrichment Table (Cellular Component)	n/a	File
goseq Enrichment Table (KEGG)	#main/goseq Enrichment Table (KEGG)	n/a	File
goseq Enrichment Table (Molecular Function)	#main/goseq Enrichment Table (Molecular Function)	n/a	File
goseq Top Categories plot (Biological Process)	#main/goseq Top Categories plot (Biological Process)	n/a	File
goseq Top Categories plot (Cellular Component)	#main/goseq Top Categories plot (Cellular Component)	n/a	File
goseq Top Categories plot (Molecular Function)	#main/goseq Top Categories plot (Molecular Function)	n/a	File

goseq/main
v0.1